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Error Analysis and Ablations: Part 6: Factorial Experiments

6. Factorial Experiments

Factorial Experiments is the part of error analysis and ablations that turns the approved TOC into a concrete learning path. The subsections below keep the focus on Chapter 17's canonical job: measurement, reliability, uncertainty, and decision support for AI systems.

6.1 Main effects

Main effects is part of the canonical scope of error analysis and ablations. In this chapter, the object under study is not merely a dataset or a model, but the full failure slice and causal comparison: the items, prompts, outputs, graders, uncertainty statements, and decision rules that turn model behavior into evidence.

The basic mathematical pattern is an empirical estimator. For a model or system $m$ evaluated on items $z_1,\ldots,z_n$, the local estimate is written

$$\Delta_{\mathrm{ablate}} = \frac{1}{n}\sum_{i=1}^n \mathbb{1}\{e_i \in E\}.$$

The formula is intentionally simple. The difficulty lies in deciding what counts as an item, which loss or score is meaningful, whether the items are independent, and whether the estimate answers the real product or research question. For main effects, those choices determine whether the reported number is evidence or decoration.

A useful invariant is that every evaluation claim should be reproducible as a tuple $(m,\mathcal{T},\pi,g,\rho)$, where $m$ is the system, $\mathcal{T}$ is the task sample, $\pi$ is the prompt or intervention policy, $g$ is the grader, and $\rho$ is the aggregation rule. If any part of this tuple is missing, the number cannot be audited.

Examples of correct use:

• Report main effects with item count, prompt protocol, grader version, and a confidence interval.
• Use paired comparisons when two models answer the same evaluation items.
• Inspect at least one meaningful slice before concluding that the aggregate result is reliable.
• Store raw outputs so future graders can be replayed without querying the model again.
• Document whether the metric is measuring capability, reliability, user value, or risk.

Non-examples:

• A leaderboard point estimate without sample size.
• A benchmark score produced with an undocumented prompt template.
• A model-graded result without judge identity, rubric, or agreement check.
• A robustness claim measured only on the easiest in-distribution examples.
• An online win declared before the randomization and logging checks pass.

Worked evaluation pattern for main effects:

1. Define the evaluation population in words before writing code.
2. Choose the smallest metric set that answers the decision question.
3. Compute the point estimate and an uncertainty statement together.
4. Run a slice or paired analysis to check whether the aggregate hides structure.
5. Archive raw outputs, scores, and seeds before changing the prompt or grader.

For AI systems, main effects is especially delicate because the same model can be used with many prompts, decoding policies, tools, retrieval contexts, and safety filters. The measured quantity is therefore a property of the system configuration, not just the base weights.

Implementation checklist:

• Use deterministic seeds for synthetic or sampled evaluation subsets.
• Print metric denominators, not only percentages.
• Keep missing, invalid, timeout, and refusal outcomes explicit.
• Prefer typed result records over loose CSV columns.
• Separate raw model outputs from normalized grader inputs.
• Track the smallest reproducible command that generated the result.
• Record whether the estimate is item-weighted, token-weighted, user-weighted, or domain-weighted.
• Write the decision rule before seeing the final score whenever the result will guide a release.

The mathematical habit to build is skepticism with structure. A score is not ignored because it is noisy; it is interpreted through the design that produced it. Main effects is one place where that habit becomes concrete.

6.2 Interactions

Interactions is part of the canonical scope of error analysis and ablations. In this chapter, the object under study is not merely a dataset or a model, but the full failure slice and causal comparison: the items, prompts, outputs, graders, uncertainty statements, and decision rules that turn model behavior into evidence.

The basic mathematical pattern is an empirical estimator. For a model or system $m$ evaluated on items $z_1,\ldots,z_n$, the local estimate is written

$$\Delta_{\mathrm{ablate}} = \frac{1}{n}\sum_{i=1}^n \mathbb{1}\{e_i \in E\}.$$

The formula is intentionally simple. The difficulty lies in deciding what counts as an item, which loss or score is meaningful, whether the items are independent, and whether the estimate answers the real product or research question. For interactions, those choices determine whether the reported number is evidence or decoration.

A useful invariant is that every evaluation claim should be reproducible as a tuple $(m,\mathcal{T},\pi,g,\rho)$, where $m$ is the system, $\mathcal{T}$ is the task sample, $\pi$ is the prompt or intervention policy, $g$ is the grader, and $\rho$ is the aggregation rule. If any part of this tuple is missing, the number cannot be audited.

Examples of correct use:

• Report interactions with item count, prompt protocol, grader version, and a confidence interval.
• Use paired comparisons when two models answer the same evaluation items.
• Inspect at least one meaningful slice before concluding that the aggregate result is reliable.
• Store raw outputs so future graders can be replayed without querying the model again.
• Document whether the metric is measuring capability, reliability, user value, or risk.

Non-examples:

• A leaderboard point estimate without sample size.
• A benchmark score produced with an undocumented prompt template.
• A model-graded result without judge identity, rubric, or agreement check.
• A robustness claim measured only on the easiest in-distribution examples.
• An online win declared before the randomization and logging checks pass.

Worked evaluation pattern for interactions:

1. Define the evaluation population in words before writing code.
2. Choose the smallest metric set that answers the decision question.
3. Compute the point estimate and an uncertainty statement together.
4. Run a slice or paired analysis to check whether the aggregate hides structure.
5. Archive raw outputs, scores, and seeds before changing the prompt or grader.

For AI systems, interactions is especially delicate because the same model can be used with many prompts, decoding policies, tools, retrieval contexts, and safety filters. The measured quantity is therefore a property of the system configuration, not just the base weights.

Implementation checklist:

• Use deterministic seeds for synthetic or sampled evaluation subsets.
• Print metric denominators, not only percentages.
• Keep missing, invalid, timeout, and refusal outcomes explicit.
• Prefer typed result records over loose CSV columns.
• Separate raw model outputs from normalized grader inputs.
• Track the smallest reproducible command that generated the result.
• Record whether the estimate is item-weighted, token-weighted, user-weighted, or domain-weighted.
• Write the decision rule before seeing the final score whenever the result will guide a release.

The mathematical habit to build is skepticism with structure. A score is not ignored because it is noisy; it is interpreted through the design that produced it. Interactions is one place where that habit becomes concrete.

6.3 Response surfaces

Response surfaces is part of the canonical scope of error analysis and ablations. In this chapter, the object under study is not merely a dataset or a model, but the full failure slice and causal comparison: the items, prompts, outputs, graders, uncertainty statements, and decision rules that turn model behavior into evidence.

The basic mathematical pattern is an empirical estimator. For a model or system $m$ evaluated on items $z_1,\ldots,z_n$, the local estimate is written

$$\Delta_{\mathrm{ablate}} = \frac{1}{n}\sum_{i=1}^n \mathbb{1}\{e_i \in E\}.$$

The formula is intentionally simple. The difficulty lies in deciding what counts as an item, which loss or score is meaningful, whether the items are independent, and whether the estimate answers the real product or research question. For response surfaces, those choices determine whether the reported number is evidence or decoration.

A useful invariant is that every evaluation claim should be reproducible as a tuple $(m,\mathcal{T},\pi,g,\rho)$, where $m$ is the system, $\mathcal{T}$ is the task sample, $\pi$ is the prompt or intervention policy, $g$ is the grader, and $\rho$ is the aggregation rule. If any part of this tuple is missing, the number cannot be audited.

Examples of correct use:

• Report response surfaces with item count, prompt protocol, grader version, and a confidence interval.
• Use paired comparisons when two models answer the same evaluation items.
• Inspect at least one meaningful slice before concluding that the aggregate result is reliable.
• Store raw outputs so future graders can be replayed without querying the model again.
• Document whether the metric is measuring capability, reliability, user value, or risk.

Non-examples:

• A leaderboard point estimate without sample size.
• A benchmark score produced with an undocumented prompt template.
• A model-graded result without judge identity, rubric, or agreement check.
• A robustness claim measured only on the easiest in-distribution examples.
• An online win declared before the randomization and logging checks pass.

Worked evaluation pattern for response surfaces:

1. Define the evaluation population in words before writing code.
2. Choose the smallest metric set that answers the decision question.
3. Compute the point estimate and an uncertainty statement together.
4. Run a slice or paired analysis to check whether the aggregate hides structure.
5. Archive raw outputs, scores, and seeds before changing the prompt or grader.

For AI systems, response surfaces is especially delicate because the same model can be used with many prompts, decoding policies, tools, retrieval contexts, and safety filters. The measured quantity is therefore a property of the system configuration, not just the base weights.

Implementation checklist:

• Use deterministic seeds for synthetic or sampled evaluation subsets.
• Print metric denominators, not only percentages.
• Keep missing, invalid, timeout, and refusal outcomes explicit.
• Prefer typed result records over loose CSV columns.
• Separate raw model outputs from normalized grader inputs.
• Track the smallest reproducible command that generated the result.
• Record whether the estimate is item-weighted, token-weighted, user-weighted, or domain-weighted.
• Write the decision rule before seeing the final score whenever the result will guide a release.

The mathematical habit to build is skepticism with structure. A score is not ignored because it is noisy; it is interpreted through the design that produced it. Response surfaces is one place where that habit becomes concrete.

6.4 ANOVA preview

ANOVA preview is part of the canonical scope of error analysis and ablations. In this chapter, the object under study is not merely a dataset or a model, but the full failure slice and causal comparison: the items, prompts, outputs, graders, uncertainty statements, and decision rules that turn model behavior into evidence.

The basic mathematical pattern is an empirical estimator. For a model or system $m$ evaluated on items $z_1,\ldots,z_n$, the local estimate is written

$$\Delta_{\mathrm{ablate}} = \frac{1}{n}\sum_{i=1}^n \mathbb{1}\{e_i \in E\}.$$

The formula is intentionally simple. The difficulty lies in deciding what counts as an item, which loss or score is meaningful, whether the items are independent, and whether the estimate answers the real product or research question. For anova preview, those choices determine whether the reported number is evidence or decoration.

A useful invariant is that every evaluation claim should be reproducible as a tuple $(m,\mathcal{T},\pi,g,\rho)$, where $m$ is the system, $\mathcal{T}$ is the task sample, $\pi$ is the prompt or intervention policy, $g$ is the grader, and $\rho$ is the aggregation rule. If any part of this tuple is missing, the number cannot be audited.

Examples of correct use:

• Report anova preview with item count, prompt protocol, grader version, and a confidence interval.
• Use paired comparisons when two models answer the same evaluation items.
• Inspect at least one meaningful slice before concluding that the aggregate result is reliable.
• Store raw outputs so future graders can be replayed without querying the model again.
• Document whether the metric is measuring capability, reliability, user value, or risk.

Non-examples:

• A leaderboard point estimate without sample size.
• A benchmark score produced with an undocumented prompt template.
• A model-graded result without judge identity, rubric, or agreement check.
• A robustness claim measured only on the easiest in-distribution examples.
• An online win declared before the randomization and logging checks pass.

Worked evaluation pattern for anova preview:

1. Define the evaluation population in words before writing code.
2. Choose the smallest metric set that answers the decision question.
3. Compute the point estimate and an uncertainty statement together.
4. Run a slice or paired analysis to check whether the aggregate hides structure.
5. Archive raw outputs, scores, and seeds before changing the prompt or grader.

For AI systems, anova preview is especially delicate because the same model can be used with many prompts, decoding policies, tools, retrieval contexts, and safety filters. The measured quantity is therefore a property of the system configuration, not just the base weights.

Implementation checklist:

• Use deterministic seeds for synthetic or sampled evaluation subsets.
• Print metric denominators, not only percentages.
• Keep missing, invalid, timeout, and refusal outcomes explicit.
• Prefer typed result records over loose CSV columns.
• Separate raw model outputs from normalized grader inputs.
• Track the smallest reproducible command that generated the result.
• Record whether the estimate is item-weighted, token-weighted, user-weighted, or domain-weighted.
• Write the decision rule before seeing the final score whenever the result will guide a release.

The mathematical habit to build is skepticism with structure. A score is not ignored because it is noisy; it is interpreted through the design that produced it. ANOVA preview is one place where that habit becomes concrete.

6.5 Attribution limits

Attribution limits is part of the canonical scope of error analysis and ablations. In this chapter, the object under study is not merely a dataset or a model, but the full failure slice and causal comparison: the items, prompts, outputs, graders, uncertainty statements, and decision rules that turn model behavior into evidence.

The basic mathematical pattern is an empirical estimator. For a model or system $m$ evaluated on items $z_1,\ldots,z_n$, the local estimate is written

$$\Delta_{\mathrm{ablate}} = \frac{1}{n}\sum_{i=1}^n \mathbb{1}\{e_i \in E\}.$$

The formula is intentionally simple. The difficulty lies in deciding what counts as an item, which loss or score is meaningful, whether the items are independent, and whether the estimate answers the real product or research question. For attribution limits, those choices determine whether the reported number is evidence or decoration.

A useful invariant is that every evaluation claim should be reproducible as a tuple $(m,\mathcal{T},\pi,g,\rho)$, where $m$ is the system, $\mathcal{T}$ is the task sample, $\pi$ is the prompt or intervention policy, $g$ is the grader, and $\rho$ is the aggregation rule. If any part of this tuple is missing, the number cannot be audited.

Examples of correct use:

• Report attribution limits with item count, prompt protocol, grader version, and a confidence interval.
• Use paired comparisons when two models answer the same evaluation items.
• Inspect at least one meaningful slice before concluding that the aggregate result is reliable.
• Store raw outputs so future graders can be replayed without querying the model again.
• Document whether the metric is measuring capability, reliability, user value, or risk.

Non-examples:

• A leaderboard point estimate without sample size.
• A benchmark score produced with an undocumented prompt template.
• A model-graded result without judge identity, rubric, or agreement check.
• A robustness claim measured only on the easiest in-distribution examples.
• An online win declared before the randomization and logging checks pass.

Worked evaluation pattern for attribution limits:

1. Define the evaluation population in words before writing code.
2. Choose the smallest metric set that answers the decision question.
3. Compute the point estimate and an uncertainty statement together.
4. Run a slice or paired analysis to check whether the aggregate hides structure.
5. Archive raw outputs, scores, and seeds before changing the prompt or grader.

For AI systems, attribution limits is especially delicate because the same model can be used with many prompts, decoding policies, tools, retrieval contexts, and safety filters. The measured quantity is therefore a property of the system configuration, not just the base weights.

Implementation checklist:

• Use deterministic seeds for synthetic or sampled evaluation subsets.
• Print metric denominators, not only percentages.
• Keep missing, invalid, timeout, and refusal outcomes explicit.
• Prefer typed result records over loose CSV columns.
• Separate raw model outputs from normalized grader inputs.
• Track the smallest reproducible command that generated the result.
• Record whether the estimate is item-weighted, token-weighted, user-weighted, or domain-weighted.
• Write the decision rule before seeing the final score whenever the result will guide a release.

The mathematical habit to build is skepticism with structure. A score is not ignored because it is noisy; it is interpreted through the design that produced it. Attribution limits is one place where that habit becomes concrete.